Association mapping reveals novel genomic regions controlling some root and stolon traits in tetraploid potato (Solanum tuberosum L.)

Basit Öğe Kaydı
dc.authoridYousaf, Muhammad Farhan/0000-0002-5389-6205
dc.authoridDemirel, Ufuk/0000-0002-3457-5086
dc.contributor.authorYousaf, Muhammad Farhan
dc.contributor.authorDemirel, Ufuk
dc.contributor.authorNaeem, Muhammad
dc.contributor.authorCaliskan, Mehmet Emin
dc.date.accessioned2024-11-07T13:24:08Z
dc.date.available2024-11-07T13:24:08Z
dc.date.issued2021
dc.departmentNiğde Ömer Halisdemir Üniversitesi
dc.description.abstractTuber crops have measurable biological variation in root and stolon phenotyping and thus may be utilized to identify genomic regions associated with these variations. This is the first comprehensive association mapping study related to potato root and stolon traits. A diverse panel of 192 tetraploid potato (Solanum tuberosum L.) genotypes were grown in aeroponics to reveal a biologically significant variation and detection of genomic regions associated with the root and stolon traits. Phenotyping of root traits was performed by image analysis software WinRHIZO (a root scanning method), and stolon traits was measured manually, while SolCAP 25K potato array was used for genotyping. Significant variation was observed between the potato genotypes for root and stolon traits along with high heritabilities (0.80 in TNS to 0.95 in SL). For marker-trait associations, Q + K linear mixed model was implemented and 50 novel genomic regions were detected. Significantly associated SNPs with stolon traits were located on chr 4, chr 6, chr 7, chr 9, chr 11 and chr 12, while those linked to root traits on chr 1, chr 2, chr 3, chr 9, chr 11, and chr 12. Structure and PCA analysis grouped genotypes into four sub-populations disclosing population genetic diversity. LD decay was observed at 2.316 Mbps (r(2) = 0.29) in the population. The identified SNPs were associated with genes performing vital functions such as root signaling and signal transduction in stress environments (GT-2 factors, protein kinases SAPK2-like and protein phosphatases StPP1), transcriptional and post-transcriptional gene regulation (RNA-binding proteins), sucrose synthesis and transporter families (UGPase, Sus3, SuSy, and StSUT1) and PVY resistance (Ry sto). The findings of our study can be employed in future breeding programs for improvement in potato production.
dc.description.sponsorshipScientific and Technological Research Council of Turkey (TUBITAK) [115O949]
dc.description.sponsorshipThe Scientific and Technological Research Council of Turkey (TUBITAK) was financially supported this study through Project # 115O949. The current paper belongs to the Ph.D. thesis of the corresponding author. I would also like to thank Eric Kuopuobe Naawe for helping in the maintenance of the aeroponic system during research work. Furthermore, an appreciation was acknowledged by all my colleagues during the phenotyping.
dc.identifier.doi10.1007/s13205-021-02727-6
dc.identifier.issn2190-572X
dc.identifier.issn2190-5738
dc.identifier.issue4
dc.identifier.pmid33927965
dc.identifier.scopus2-s2.0-85102818595
dc.identifier.scopusqualityQ2
dc.identifier.urihttps://doi.org/10.1007/s13205-021-02727-6
dc.identifier.urihttps://hdl.handle.net/11480/13940
dc.identifier.volume11
dc.identifier.wosWOS:000631124700003
dc.identifier.wosqualityQ3
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.language.isoen
dc.publisherSpringer Heidelberg
dc.relation.ispartof3 Biotech
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı
dc.rightsinfo:eu-repo/semantics/openAccess
dc.snmzKA_20241106
dc.subjectAM
dc.subjectSolCAP
dc.subjectRoot
dc.subjectStolon
dc.subjectAeroponic
dc.subjectPotato
dc.titleAssociation mapping reveals novel genomic regions controlling some root and stolon traits in tetraploid potato (Solanum tuberosum L.)
dc.typeArticle

Dosyalar

Koleksiyon

WoS İndeksli Yayınlar Koleksiyonu
PubMed İndeksli Yayın Koleksiyonu
Scopus İndeksli Yayınlar Koleksiyonu