Identification of BABY BOOM-like genes (SbBBM) in Sorghum [(Sorghum bicolor) L. Moench]

Basit Öğe Kaydı
dc.authoridCALISKAN, MEHMET EMIN/0000-0002-4703-8853
dc.contributor.authorYavuz, Caner
dc.contributor.authorCaliskan, Mehmet Emin
dc.date.accessioned2024-11-07T13:24:35Z
dc.date.available2024-11-07T13:24:35Z
dc.date.issued2022
dc.departmentNiğde Ömer Halisdemir Üniversitesi
dc.description.abstractRecalcitrant plants are difficult to handle in tissue culture, and this limits their accessibility for various studies. Novel strategies are being developed to compensate the restricted nature of these plants to make them more adapted to tissue culture applications. Sorghum is one of the most recalcitrant plants with decreased efficiency and non-standardized tissue culture protocols. The advances in embryogenic genes ease the somatic embryo formation and regeneration ability in sorghum. BABY BOOM (BBM) is the most prominent transcription factor involved in somatic embryogenesis, even without exogenous auxin application, the spontaneous somatic embryo formation could occur in plants, which makes this gene(s) an optimal target for recalcitrant plants. This study is designed to characterize SbBBM-like genes in sorghum. Two similar length of protein pairs, SbBBM-like 1 (XP_021313568.1) and SbBBM-like 2 (XP_002452443.1), were identified in cv. Aldari and cis-regulatory elements of these proteins were observed to be involved in particularly light response and hormonal regulation. The protein -protein interaction data indicated possible role in auxin mechanism. The expression data showed SbBBM-like was highly expressed in seedling root and embryogenic callus, however the expression was highest in embryogenic callus for SbBBM-like 2 with almost 200-fold increase, compared to other tissues.
dc.description.sponsorshipNigde Omer Halisdemir University Research Project Units [TGT 2021/7-HIDEP]
dc.description.sponsorshipThis research was awarded funding from Nigde Omer Halisdemir University Research Project Units, project no TGT 2021/7-HIDEP.
dc.identifier.doi10.1007/s42976-021-00210-9
dc.identifier.endpage676
dc.identifier.issn0133-3720
dc.identifier.issn1788-9170
dc.identifier.issue4
dc.identifier.scopus2-s2.0-85115238282
dc.identifier.scopusqualityQ2
dc.identifier.startpage667
dc.identifier.urihttps://doi.org/10.1007/s42976-021-00210-9
dc.identifier.urihttps://hdl.handle.net/11480/14194
dc.identifier.volume50
dc.identifier.wosWOS:000698071800001
dc.identifier.wosqualityQ3
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.language.isoen
dc.publisherSpringer Heidelberg
dc.relation.ispartofCereal Research Communications
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı
dc.rightsinfo:eu-repo/semantics/closedAccess
dc.snmzKA_20241106
dc.subjectSorghum
dc.subjectSomatic embryogenesis
dc.subjectBABY BOOM
dc.subjectIn silico
dc.titleIdentification of BABY BOOM-like genes (SbBBM) in Sorghum [(Sorghum bicolor) L. Moench]
dc.typeArticle

Dosyalar

Koleksiyon

WoS İndeksli Yayınlar Koleksiyonu
Scopus İndeksli Yayınlar Koleksiyonu