Tidying-up the plant nuclear space: domains, functions, and dynamics

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dc.authoridRosa, Stefanie/0000-0002-8100-1253
dc.authoridGaudin, Valerie/0000-0002-1356-5567
dc.authoridFarrona, Sara/0000-0002-6855-2237
dc.authoridMozgova, Iva/0000-0002-3815-9223
dc.authoridDvorackova, Martina/0000-0001-5998-6159
dc.authoridSchubert, Daniel/0000-0003-2390-0733
dc.authoridTek, Ahmet L./0000-0002-3292-5142
dc.contributor.authorSantos, Ana Paula
dc.contributor.authorGaudin, Valerie
dc.contributor.authorMozgova, Iva
dc.contributor.authorPontvianne, Frederic
dc.contributor.authorSchubert, Daniel
dc.contributor.authorTek, Ahmet L.
dc.contributor.authorDvorackova, Martina
dc.date.accessioned2024-11-07T13:35:31Z
dc.date.available2024-11-07T13:35:31Z
dc.date.issued2020
dc.departmentNiğde Ömer Halisdemir Üniversitesi
dc.description.abstractUnderstanding how the packaging of chromatin in the nucleus is regulated and organized to guide complex cellular and developmental programmes, as well as responses to environmental cues is a major question in biology. Technological advances have allowed remarkable progress within this field over the last years. However, we still know very little about how the 3D genome organization within the cell nucleus contributes to the regulation of gene expression. The nuclear space is compartmentalized in several domains such as the nucleolus, chromocentres, telomeres, protein bodies, and the nuclear periphery without the presence of a membrane around these domains. The role of these domains and their possible impact on nuclear activities is currently under intense investigation. In this review, we discuss new data from research in plants that clarify functional links between the organization of different nuclear domains and plant genome function with an emphasis on the potential of this organization for gene regulation.
dc.description.sponsorshipEU COST action INDEPTH [CA16212]; College of Science (NUI Galway); NUI Galway Research Grant for Returning Academic Careers [QA151]; Swedish Research Council (Vetenskapsradet) [2018-0410]; ITQB-NOVA; GREEN-IT Bioresources for Sustainability; Portuguese Foundation for Science and Technology (FCT) [DL 57-002/DL/2018]; Ministry of Education, Youth and Sports of the Czech Republic INTER-COST project [LTC19050]; ANR JCJC NucleoReg [ANR-15-CE12-0013-01]; French Laboratory of Excellence project TULIP [ANR-10-LABX-41, ANR-11-IDEX-0002-02]; European Research Council under the European Union's Horizon 2020 research and innovation programme [757600]; Scientific and Technological Research Council of Turkey (TUBITAK) [118Z589]; DFG [CRC973]; IMPRS-BAC; Saclay Plant Science-SPS [ANR-17-EUR-0007]; European Research Council (ERC) [757600] Funding Source: European Research Council (ERC); Agence Nationale de la Recherche (ANR) [ANR-15-CE12-0013] Funding Source: Agence Nationale de la Recherche (ANR)
dc.description.sponsorshipThis review integrates the collaborative efforts supported by the EU COST action INDEPTH (CA16212, www.brookes.ac.uk/indepth/).The authors acknowledge their respective funding agencies and programmes: SF was supported by the College of Science (NUI Galway) and by an NUI Galway Research Grant for Returning Academic Careers QA151; SR was supported by the Swedish Research Council (Vetenskapsradet) grant no. 2018-0410; APS was supported by ITQB-NOVA, GREEN-IT Bioresources for Sustainability', and the Portuguese Foundation for Science and Technology (FCT) by DL 57-002/DL/2018; IM was supported by the Ministry of Education, Youth and Sports of the Czech Republic INTER-COST project LTC19050; FP was supported by the ANR JCJC NucleoReg [ANR-15-CE12-0013-01] and by the French Laboratory of Excellence project TULIP (ANR-10-LABX-41 and ANR-11-IDEX-0002-02); CL was supported by the European Research Council under the European Union's Horizon 2020 research and innovation programme (grant agreement no. 757600); ALT was supported by The Scientific and Technological Research Council of Turkey (TUBITAK) through 118Z589; DS was supported by the DFG-funded CRC973 (project C7) and IMPRS-BAC; the Institut Jean-Pierre Bourgin benefits from the support of Saclay Plant Science-SPS (ANR-17-EUR-0007).
dc.identifier.doi10.1093/jxb/eraa282
dc.identifier.endpage5178
dc.identifier.issn0022-0957
dc.identifier.issn1460-2431
dc.identifier.issue17
dc.identifier.pmid32556244
dc.identifier.scopus2-s2.0-85096006285
dc.identifier.scopusqualityQ1
dc.identifier.startpage5160
dc.identifier.urihttps://doi.org/10.1093/jxb/eraa282
dc.identifier.urihttps://hdl.handle.net/11480/16551
dc.identifier.volume71
dc.identifier.wosWOS:000573252000005
dc.identifier.wosqualityQ1
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.language.isoen
dc.publisherOxford Univ Press
dc.relation.ispartofJournal of Experimental Botany
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı
dc.rightsinfo:eu-repo/semantics/openAccess
dc.snmzKA_20241106
dc.subject3D Chromatin organization
dc.subjectchromocentres
dc.subjectgene expression
dc.subjectliquid-liquid phase separation (LLPS)
dc.subjectnuclear domains
dc.subjectnuclear bodies
dc.subjectnucleolus
dc.subjectnuclear periphery
dc.subjecttelomeres
dc.subjecttopologically associated domains (TADs)
dc.titleTidying-up the plant nuclear space: domains, functions, and dynamics
dc.typeReview Article

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