Discovery and genome-wide characterization of a novel miniature inverted repeat transposable element reveal genome-specific distribution in Glycine

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dc.authoridTek, Ahmet L./0000-0002-3292-5142
dc.authoridYILDIZ AKKAMIS, HUMEYRA/0000-0003-2143-9242
dc.authoridKaya, Emir Can/0000-0001-5717-3074
dc.contributor.authorAkkamis, Huemeyra Yildiz
dc.contributor.authorKaya, Emir Can
dc.contributor.authorTek, Ahmet L.
dc.date.accessioned2024-11-07T13:24:58Z
dc.date.available2024-11-07T13:24:58Z
dc.date.issued2024
dc.departmentNiğde Ömer Halisdemir Üniversitesi
dc.description.abstractBackground Miniature inverted repeat transposable elements (MITEs) are a dynamic component responsible for genome evolution. Tourist MITEs are derived from and mobilized by elements from the harbinger superfamily. Objective In this study, a novel family of Tourist-like MITE was characterized in wild soybean species Glycine falcata. The new GftoMITE1 was initially discovered as an insertional polymorphism of the centromere-specific histone H3 (CenH3) gene in G. falcata. Methods Using polymerase chain reaction, cloning and sequencing approaches, we showed a high number of copies of the GftoMITE1 family. Extensive bioinformatic analyses revealed the genome-level distribution and locus-specific mapping of GftoMITE1 members in Glycine species. Results Our results provide the first extensive characterization of the GftoMITE1 family and contribute to the understanding of the evolution of MITEs in the Glycine genus. Genome-specific GftoMITE1 was prominent in perennial wild soybean species, but not in annual cultivated soybean (Glycine max) or its progenitor (Glycine soja). Conclusions We discuss that the GftoMITE1 family reveals a single rapid amplification in G. falcata and could have potential implications for gene regulation and soybean breeding as an efficient genetic marker for germplasm utilization in the future.
dc.description.sponsorshipTUBITAK [118O670]; The 100/2000 YOEK Program; Ayhan Sahenk Foundation
dc.description.sponsorshipThis work was partially supported by the TUBITAK Project ID 118O670. HYA has a fellowship from the 100/2000 YOEK Program and Ayhan Sahenk Foundation.
dc.identifier.doi10.1007/s13258-024-01519-5
dc.identifier.issn1976-9571
dc.identifier.issn2092-9293
dc.identifier.pmid38676850
dc.identifier.scopus2-s2.0-85191708363
dc.identifier.scopusqualityQ3
dc.identifier.urihttps://doi.org/10.1007/s13258-024-01519-5
dc.identifier.urihttps://hdl.handle.net/11480/14430
dc.identifier.wosWOS:001208953700001
dc.identifier.wosqualityN/A
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.indekslendigikaynakPubMed
dc.language.isoen
dc.publisherSpringer
dc.relation.ispartofGenes & Genomics
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı
dc.rightsinfo:eu-repo/semantics/closedAccess
dc.snmzKA_20241106
dc.subjectDNA transposons
dc.subjectEvolution
dc.subjectGlycine
dc.subjectIntron
dc.subjectMITE
dc.subjectTourist
dc.titleDiscovery and genome-wide characterization of a novel miniature inverted repeat transposable element reveal genome-specific distribution in Glycine
dc.typeArticle

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