Elucidating the genetic diversity and population structure of international cotton germplasm using inter-primer binding site (iPBS) retrotransposon marker system

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dc.authoridBakhsh, Allah/0000-0003-3561-7863
dc.authoridDemirel, Ufuk/0000-0002-3457-5086
dc.contributor.authorYesil Bayril, Binnur
dc.contributor.authorBakhsh, Allah
dc.contributor.authorNadeem, Muhammad Azhar
dc.contributor.authorDemirel, Ufuk
dc.date.accessioned2024-11-07T13:32:35Z
dc.date.available2024-11-07T13:32:35Z
dc.date.issued2024
dc.departmentNiğde Ömer Halisdemir Üniversitesi
dc.description.abstractCotton (Gossypium hirsutum L.) is an important crop throughout the world and is one of the most important industrial raw materials. It is very important to characterize the available cotton germplasm aiming to identify novel genetic and genomic resources that can be used for future cotton breeding. Keeping this in view, a total of 179 cotton genotypes were characterized with the inter-primer binding site (iPBS) retrotransposon marker system. Seven iPBSretrotransposon primers yielded a total of 134 scoreable bands and among these, 128 bands were polymorphic. The mean polymorphic bands per primer were 18.28, with values ranging between 16 and 21. The mean polymorphism rate of 7 iPBS retrotransposon primers was calculated as 96.28%. The polymorphism information content value varied between 0.31 and 0.46 with an average of 0.395. Genetic similarity was calculated using the POPGENE software and values ranged between 0.320 and 0.955. Population structure and neighbor-joining analysis divided the evaluated germplasm into two populations. The analysis of molecular variance revealed that maximum variations (96%) are due to differences within the populations. The information presented here has comprehensively demonstrated the potential of iPBSretrotransposon markers in detecting genetic diversity and phylogenetic association analyses of cotton. This knowledge will be helpful for future cotton breeding.
dc.description.sponsorshipScientific Research Project Coordination Unit of Nigde Omer Halisdemir University; [TGT 2020/22-LUETEP]
dc.description.sponsorshipThis research (Project Number: TGT 2020/22-LUETEP) was funded by the Scientific Research Project Coordination Unit of Nigde Omer Halisdemir University.
dc.identifier.doi10.1007/s10722-023-01726-1
dc.identifier.endpage1748
dc.identifier.issn0925-9864
dc.identifier.issn1573-5109
dc.identifier.issue5
dc.identifier.scopus2-s2.0-85171356796
dc.identifier.scopusqualityQ2
dc.identifier.startpage1737
dc.identifier.urihttps://doi.org/10.1007/s10722-023-01726-1
dc.identifier.urihttps://hdl.handle.net/11480/15491
dc.identifier.volume71
dc.identifier.wosWOS:001069249700001
dc.identifier.wosqualityQ2
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.language.isoen
dc.publisherSpringer
dc.relation.ispartofGenetic Resources and Crop Evolution
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı
dc.rightsinfo:eu-repo/semantics/openAccess
dc.snmzKA_20241106
dc.subjectCotton (Gossypium hirsutum L.) center dot
dc.subjectMolecular markers center dot Molecular characterization center dot
dc.subjectPhylogenetic analysis center dot Retrotransposons center dot iPBS
dc.titleElucidating the genetic diversity and population structure of international cotton germplasm using inter-primer binding site (iPBS) retrotransposon marker system
dc.typeArticle

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