Incidence, distribution and limited genetic variability among Turkish isolates of Grapevine Pinot gris virus from different grapevine cultivars

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dc.contributor.authorElçi E.
dc.contributor.authorGazel M.
dc.contributor.authorRoumi V.
dc.contributor.authorÇağlayan K.
dc.date.accessioned2019-08-01T13:38:39Z
dc.date.available2019-08-01T13:38:39Z
dc.date.issued2018
dc.departmentNiğde ÖHÜ
dc.description.abstractGrapevine Pinot gris virus (GPGV) was firstly identified in northern Italy by deep sequencing from grapevine cv. Pinot gris, exhibiting mottling and deformation of the leaves. The objective of this study was to investigate the prevalence and genetic variability of GPGV isolates obtained from different local and imported grapevine cultivars in Turkey based on partial coat protein, movement protein and RNA-dependent RNA polymerase (RdRp) domain of the replicase (Rep) gene. Two hundred and one grapevine samples from different provinces were tested by RT-PCR assays, approximately 25% of which were found to be infected by GPGV. The PCR products were sequenced and based on the phylogenetic analysis, RdRp gene was found to be most conserved region. The phylograms of three genomic regions revealed correlation between geography and genetic structure. Furthermore, nucleotide diversity studies revealed a low divergence from the homologous sequences from GenBank and some variations within the groups were detected. The results presented in this study provide a better understanding of genetic variation and phylogenetic of GPGV isolates worldwide. © 2018, Deutsche Phytomedizinische Gesellschaft.
dc.identifier.doi10.1007/s41348-018-0175-3
dc.identifier.endpage476
dc.identifier.issn1861-3829
dc.identifier.issue5
dc.identifier.scopus2-s2.0-85053698599
dc.identifier.scopusqualityQ2
dc.identifier.startpage469
dc.identifier.urihttps://dx.doi.org/10.1007/s41348-018-0175-3
dc.identifier.urihttps://hdl.handle.net/11480/1603
dc.identifier.volume125
dc.identifier.wosWOS:000446097400004
dc.identifier.wosqualityQ3
dc.indekslendigikaynakWeb of Science
dc.indekslendigikaynakScopus
dc.institutionauthor[0-Belirlenecek]
dc.language.isoen
dc.publisherSpringer Berlin Heidelberg
dc.relation.ispartofJournal of Plant Diseases and Protection
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı
dc.rightsinfo:eu-repo/semantics/closedAccess
dc.subjectCP
dc.subjectGenetic variation
dc.subjectGPGV
dc.subjectMP
dc.subjectRep
dc.subjectVitis vinifera L
dc.titleIncidence, distribution and limited genetic variability among Turkish isolates of Grapevine Pinot gris virus from different grapevine cultivars
dc.typeArticle

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